Thermal unfolding molecular dynamics simulation of spinach plastocyanin
Author:
, , , , , ,Year
: 2010
Abstract: Thermal denaturation of spinach plastocyanin was investigated by
molecular dynamics simulation in order to study of unfolding
mechanism of this protein. Molecular dynamics simulation was carried
out in high temperature within 18 ns by using Gromacs software. The
radius of gyration (Rg) and Root Mean Deviation (RMSD) have been
used to follow the unfolding process. Moreover, distributions of Rg
were used to identify states during the simulation. By using Gaussian
curve fitted to distribution of Rg curves, three state and two transition
ensemble was detected during the simulation.
molecular dynamics simulation in order to study of unfolding
mechanism of this protein. Molecular dynamics simulation was carried
out in high temperature within 18 ns by using Gromacs software. The
radius of gyration (Rg) and Root Mean Deviation (RMSD) have been
used to follow the unfolding process. Moreover, distributions of Rg
were used to identify states during the simulation. By using Gaussian
curve fitted to distribution of Rg curves, three state and two transition
ensemble was detected during the simulation.
Keyword(s): spinach plastocyanin,sodium phosphate,MD simulation
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Thermal unfolding molecular dynamics simulation of spinach plastocyanin
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| contributor author | محسن سرگلزائی | en |
| contributor author | محمدرضا حسین دخت | en |
| contributor author | سیدفرامرز طیاری | en |
| contributor author | M. R. Bozorgmehr | en |
| contributor author | Mohsen Sargolzaei | fa |
| contributor author | Mohammad Reza Housaindokht | fa |
| contributor author | Sayyed Faramarz Tayyari | fa |
| date accessioned | 2020-06-06T13:56:55Z | |
| date available | 2020-06-06T13:56:55Z | |
| date copyright | 2/24/2010 | |
| date issued | 2010 | |
| identifier uri | https://libsearch.um.ac.ir:443/fum/handle/fum/3375991?locale-attribute=en | |
| description abstract | Thermal denaturation of spinach plastocyanin was investigated by molecular dynamics simulation in order to study of unfolding mechanism of this protein. Molecular dynamics simulation was carried out in high temperature within 18 ns by using Gromacs software. The radius of gyration (Rg) and Root Mean Deviation (RMSD) have been used to follow the unfolding process. Moreover, distributions of Rg were used to identify states during the simulation. By using Gaussian curve fitted to distribution of Rg curves, three state and two transition ensemble was detected during the simulation. | en |
| language | English | |
| title | Thermal unfolding molecular dynamics simulation of spinach plastocyanin | en |
| type | Conference Paper | |
| contenttype | External Fulltext | |
| subject keywords | spinach plastocyanin | en |
| subject keywords | sodium phosphate | en |
| subject keywords | MD simulation | en |
| identifier link | https://profdoc.um.ac.ir/paper-abstract-1014933.html | |
| conference title | نهمین همایش بیوشیمی فیزیک ایران | fa |
| identifier articleid | 1014933 |