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mrsFAST: a cache-oblivious algorithm for short-read mapping

Type: Journal Paper

Author : Sahinalp, S Cenk; Hach, Faraz; Hormozdiari, Fereydoun; Alkan, Can; Hormozdiari, Farhad; Birol, Inanc; Eichler, Evan E

Year: 2010

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Spaced seed data structures

Type: Conference Paper

Author : Birol, Inanc; Mohamadi, Hamid; Raymond, Anthony; Raghavan, Karthika; Chu, Justin; Vandervalk, Benjamin P; Jackman, Shaun D; Warren, Rene L

Publisher: IEEE

Year: 2014

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

Type: Conference Paper

Author : Vandervalk, Benjamin P; Jackman, Shaun D; Raymond, Anthony; Mohamadi, Hamid; Yang, Chen; Attali, Dean A; Chu, Justin; Warren, Rene L; Birol, Inanc

Publisher: IEEE

Year: 2014

A Clinically Validated Diagnostic Second-Generation Sequencing Assay for Detection of Hereditary BRCA1 and BRCA2 Mutations

Type: Journal Paper

Author : Bosdet,Ian E.; Docking,T. R.; Butterfield,Yaron S.; Mungall,Andrew J.; Zeng,Thomas; Coope,Robin J.; Yorida,Erika; Chow,Katie; Bala,Miruna; Young,Sean S.; Hirst,Martin; Birol,Inanc; Moore,Richard A.; Jones,Steven J.; Marra,Marco A.; Holt,Rob; Karsan,Aly

Publisher: Elsevier

Year: 2013

The genetic landscape of high-risk neuroblastoma

Type: Journal Paper

Author : Pugh, Trevor J; Morozova, Olena; Attiyeh, Edward F; Asgharzadeh, Shahab; Wei, Jun S; Auclair, Daniel; Carter, Scott L; Cibulskis, Kristian; Hanna, Megan; Kiezun, Adam; Kim, Jaegil; Lawrence, Michael S; Lichenstein, Lee; McKenna, Aaron; Pedamallu, Chandra Sekhar; Ramos, Alex H; Shefler, Erica; Sivachenko, Andrey; Sougnez, Carrie; Stewart, Chip; Ally, Adrian; Birol, Inanc; Chiu, Readman; Corbett, Richard D; Hirst, Martin; Jackman, Shaun D; Kamoh, Baljit; Khodabakshi, Alireza Hadj; Krzywinski, Mart

Publisher: Nature Publishing Group

Year: 2013

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mrsFAST: a cache-oblivious algorithm for short-read mapping

Spaced seed data structures

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

A Clinically Validated Diagnostic Second-Generation Sequencing Assay for Detection of Hereditary BRCA1 and BRCA2 Mutations

The genetic landscape of high-risk neuroblastoma

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mrsFAST: a cache-oblivious algorithm for short-read mapping

Spaced seed data structures

Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph

A Clinically Validated Diagnostic Second-Generation Sequencing Assay for Detection of Hereditary BRCA1 and BRCA2 Mutations

The genetic landscape of high-risk neuroblastoma